prokaryotic genome annotation pipeline (pgap)  (Biotechnology Information)

Journal: Microbiology Resource Announcements

Article Title: Draft genome sequences of four lactic acid bacteria from fermented chicken meat unveil biosynthetic gene clusters for antimicrobial compounds

doi: 10.1128/mra.00038-25

Figure Lengend Snippet: Genomic features of the sequenced four LAB strains isolated from fermented chicken meat in Chattogram, Bangladesh

Article Snippet: The assembled genomes were annotated using the National Center for Biotechnology Information Prokaryotic Genome Annotation Pipeline (PGAP) v6.9 ( ) and PATRIC ( ) with the in-built RASTtk pipeline to identify the species, with transport proteins identified via TCDB , drug targets predicted using DrugBank v6.0 , and additional analyses performed for CRISPR arrays and prophages using CRISPRCasFinder ( ) and integrative and conjugative elements using ICEFinder ( ).

Techniques: Isolation, Functional Assay, CRISPR